Tuesday, January 29, 2013

Saturday, January 19, 2013

Photosynthesis Tutorial Essay Q13 [8]


·         Light energy is converted to chemical energy in the form of ATP.
·         Consist of cyclic photophosphorylation involving only photosystem I and
non-cyclic photophosphorylation involving both photosystems II and I.
·         Light energy captured by pigments/light harvesting complexes passed to
special chlorophyll a, causing excitation of electrons to
higher energy level, which is subsequently captured by primary electron acceptor.
·         For cyclic photophosphorylation, excited electrons are returned back to
special chlorophyll a (final electron acceptor), after passing down chain of electron carriers and proton pumps.
·         For non-cyclic photophosphorylation, Photosystem I receives replacement of
electrons from photosystem II,
·         photosystem II receives replacement of electrons from photolysis of water with
production of oxygen as byproduct.
·         Excited electrons are passed along a chain of electron carriers of progressively
lower energy level/electron transport chain, energy released used by proton pumps to
pump H+ from stroma into thylakoid space.
·         Creating a proton gradient across thylakoid membrane.
·         ATP synthase harness proton gradient/proton motive force to generate ATP as
H+ diffuse back into stroma via ATP synthase.
·         Chemiosmosis couples energy released from passage of electrons down
electron transport chain to active transport of H+ from stroma into thylakoid space
via proton pumps.
·         For non-cyclic photophosphorylation, NADP reductase combines electrons with H+
and NADP+ (final electron acceptor) to form NADPH for use in Calvin cycle.



Tuesday, September 18, 2012

  

1) Comparison between prokaryotic mRNA (polycistronic) and eukaryotic mRNA (monocistronic) 


- note that 5' UTR and 3' UTR is present in both prokaryotes and eukaryotes. The 5' UTR in prokaryote is important as it contains the Shine-Dalgarno sequence, while the 5' UTR in eukaryotes is important as it can regulate translation as regulatory proteins can bind to it and prevent binding of ribosomes so as to carry out translation.

 

- note that unlike the prokaryotes, there is RNA processing in eukaryotes. Hence eukaryotic mRNA contain the 5' GTP cap (important for recognition/binding by eukaryotic ribosome and prevent mRNA degradation) and the 3' poly A tail (facilitate export of mRNA from nucleus and prevent mRNA degradation)  








2) Another picture showing that the prokaryotic mRNA is polycistronic.

- The Shine-Dalgarno sequences (impt for recognition and binding of prokaryotic ribosomes) are in between the multiple start and stop codons on the prokaryotic mRNA.










 3) Another diagram that shows the Shine-Dalgarno sequences on prokaryotic mRNA more clealy.


- Since the prokaryotic mRNA has multiple ribosome binding sites called Shine Dalgarno sequences, thus can lead to the synthesis of several different polypeptides. This is unlike the eukaryotic mRNA with only one ribosome binding site/ start site, so it can only lead to the synthesis of one polypeptide.